Managing payroll is one of the most critical yet time-consuming tasks for small businesses. From calculating employee wages to filing taxes and staying compliant, payroll can become overwhelming—especially without the right software. That’s where QuickBooks for small business with payroll comes in.
Whether you’re a solopreneur using QuickBooks Self-Employed Payroll, or a growing business leveraging Intuit QuickBooks Online Payroll, QuickBooks provides a range of tools to simplify the payroll process while keeping you compliant.
If you need personalized help setting up payroll or managing your QuickBooks system, call 844-753-8012 for expert support.
Why Small Businesses Choose QuickBooks for Payroll
Small businesses need a payroll solution that is:
- Accurate: Automatic calculations for wages, taxes, and deductions.
- Time-saving: Automates recurring payroll tasks.
- Compliant: Handles federal, state, and local tax filings.
- Flexible: Works for contractors, employees, or hybrid models.
- Integrated: Connects seamlessly with QuickBooks accounting and reporting.
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QuickBooks Payroll Options for Small Businesses
1. QuickBooks Self-Employed Payroll
Ideal for freelancers and independent contractors. Features include:
- Simple payroll calculations
- Automatic tax withholdings
- Quarterly tax filing reminders
- Integration with QuickBooks Self-Employed app
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2. Intuit QuickBooks Online Payroll
Designed for small businesses with employees. Features include:
- Automated payroll runs
- Direct deposit to employees
- Tax calculations and filings
- Employee self-service portal
- Integration with QuickBooks Online
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3. SimplyInsured Integration with QuickBooks Payroll
For small businesses looking to manage benefits alongside payroll:
- Health insurance quoting and management
- Integration with QuickBooks for automatic deductions
- Simplified employee onboarding
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4. Square Payroll with QuickBooks
Some businesses combine Square Payroll with QuickBooks to:
- Sync payments automatically
- Track contractor payments
- Reconcile payroll in QuickBooks accounting
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Benefits of Using QuickBooks for Payroll
1. Automation Saves Time
QuickBooks can automate:
- Payroll schedules
- Employee payments
- Tax filings
This reduces manual errors and ensures compliance.
2. Seamless Tax Compliance
QuickBooks handles:
- Federal and state tax calculations
- Tax form generation (W-2s, 1099s)
- Direct tax filing with Intuit services
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3. Employee Self-Service
Employees can:
- Access pay stubs online
- View tax documents
- Update personal information
4. Integration with Accounting
All payroll transactions sync automatically with QuickBooks accounting, making reporting and reconciliation easier.
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How to Set Up Payroll in QuickBooks
Step 1: Choose Your Payroll Plan
QuickBooks offers multiple plans:
- Self-Employed Payroll (freelancers)
- Core, Premium, or Elite (small business employees)
Step 2: Add Employees or Contractors
- Name, address, and tax info
- Pay rate or salary
Step 3: Connect Bank Account
- For direct deposits
- For payroll tax payments
Step 4: Set Up Pay Schedules
- Weekly, biweekly, or monthly
Step 5: Run Payroll
- QuickBooks calculates paychecks
- Applies deductions
- Generates payroll taxes
QuickBooks Payroll Pricing for Small Businesses
Pricing depends on the plan:
- Self-Employed Payroll: Basic payroll features for freelancers
- Core Plan: Full payroll for small teams
- Premium & Elite Plans: Additional HR support and tax filing
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Tips for Small Businesses Using QuickBooks Payroll
- Keep employee data accurate and up-to-date
- Reconcile payroll with accounting monthly
- Set reminders for tax deadlines
- Utilize employee self-service to reduce administrative work
- Take advantage of benefits integrations like SimplyInsured
Common Payroll Questions for Small Businesses
Q1: Can QuickBooks handle payroll for small business contractors?
Yes, QuickBooks allows you to pay 1099 contractors and report payments.
Q2: Can I use QuickBooks Self-Employed Payroll for employees?
No, Self-Employed Payroll is for freelancers. Use QuickBooks Online Payroll for employees.
Q3: How does Square Payroll integrate with QuickBooks?
Square Payroll syncs employee pay and tax data into QuickBooks automatically.
Q4: Can QuickBooks automatically file payroll taxes?
Yes, with Intuit Online Payroll or QuickBooks Online Payroll plans.
Advantages of Using QuickBooks Payroll Over Competitors

QuickBooks Payroll for Growing Small Businesses
QuickBooks scales with your business:
- Start with Self-Employed Payroll if you have freelancers
- Move to Core or Premium Payroll as you hire employees
- Add HR features with Elite plan for benefits, PTO tracking, and compliance
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Conclusion
Managing payroll is no longer a headache for small businesses. With QuickBooks for small business with payroll, you can:
- Automate paychecks
- File taxes on time
- Manage employees and contractors
- Integrate payroll with accounting
Whether you’re a freelancer using QuickBooks Self-Employed Payroll, or a small business scaling with Intuit QuickBooks Online Payroll, QuickBooks provides a reliable, compliant, and time-saving payroll solution.
📞 Call 844-753-8012 today for expert help setting up QuickBooks payroll for your small business.
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